Added a refactor restructure command that analyses import graphs, clusters tightly-coupled files, and generates a plan to reorganise them into cohesive directories. It builds an import graph, clusters files by coupling, computes file moves, and can execute the plan — all without needing AI assistance. Also exposed it as a /restructure Claude command for interactive use.

Then I ate my own dogfood and used it to restructure the assist codebase itself. Large modules like complexity/shared.ts, prs/listComments.ts, transcript/parseVtt.ts, and index.ts were broken apart into focused sub-modules. The main index.ts went from a monolithic command registration file to thin register*.ts files. This brought the codebase maintainability scores above 60 across the board.

Also added a readme CLI command (previously only a Claude command) and capped wontfix reasons to 15 words.